import requests from progress.bar import Bar import os import sys # # Script for MIMIC-IV project data download # # Getting command line parameter if len(sys.argv) > 1: token = sys.argv[1] file_path = { "mimic-iv.sqlite":[ "http://m2ds.alibellamine.me/", 3214753792 ] } print("Downloading MIMIC-IV data") folder = "./data" for file_name, file_metadata in file_path.items(): destination = "/".join([folder, file_name]) download_file = True if os.path.exists(destination) and (os.path.getsize(destination) != file_metadata[1]): download_file = False if os.path.exists("./data") == False: os.mkdir("./data") if download_file: uri = f"{file_metadata[0]}/{token}" r = requests.get(uri, stream=True) file_size = int(int(r.headers.get('content-length'))/1000) with open(destination, "wb") as f: with Bar(f"Downloading {file_name}", max=int(file_size)) as bar: for chunck in r.iter_content(chunk_size=1024): f.write(chunck) bar.next()